All modules for which code is available

• pyXLMS.data._crosslink
• pyXLMS.data._csm
• pyXLMS.data._parser_result
• pyXLMS.data._util
• pyXLMS.exporter._to_alphalink2
• pyXLMS.exporter._to_impxfdr
• pyXLMS.exporter._to_msannika
• pyXLMS.exporter._to_proxl
• pyXLMS.exporter._to_pyxlinkviewer
• pyXLMS.exporter._to_xifdr
• pyXLMS.exporter._to_xinet
• pyXLMS.exporter._to_xiview
• pyXLMS.exporter._to_xlinkdb
• pyXLMS.exporter._to_xlmstools
• pyXLMS.exporter._to_xmas
• pyXLMS.parser
• pyXLMS.parser._parser_xldbse_custom
• pyXLMS.parser._parser_xldbse_maxquant
• pyXLMS.parser._parser_xldbse_merox
• pyXLMS.parser._parser_xldbse_msannika
• pyXLMS.parser._parser_xldbse_mzid
• pyXLMS.parser._parser_xldbse_plink
• pyXLMS.parser._parser_xldbse_scout
• pyXLMS.parser._parser_xldbse_xi
• pyXLMS.parser._parser_xldbse_xinet_xiview
• pyXLMS.parser._parser_xldbse_xlinkx
• pyXLMS.parser._util
• pyXLMS.pipelines
• pyXLMS.plotting._plot_crosslink_type_distribution
• pyXLMS.plotting._plot_peptide_pair_distribution
• pyXLMS.plotting._plot_protein_distribution
• pyXLMS.plotting._plot_residue_pair_distribution
• pyXLMS.plotting._plot_score_distribution
• pyXLMS.plotting._plot_string_score_distribution
• pyXLMS.plotting._plot_target_decoy_distribution
• pyXLMS.plotting._plot_venn_diagram
• pyXLMS.transform._aggregate
• pyXLMS.transform._annotate_fdr
• pyXLMS.transform._annotate_string_scores
• pyXLMS.transform._filter
• pyXLMS.transform._from_dataframe
• pyXLMS.transform._intersection
• pyXLMS.transform._json
• pyXLMS.transform._reannotate_decoy_labels
• pyXLMS.transform._reannotate_positions
• pyXLMS.transform._summary
• pyXLMS.transform._targets_only
• pyXLMS.transform._to_dataframe
• pyXLMS.transform._to_proforma
• pyXLMS.transform._util
• pyXLMS.transform._validate