We develop proteomics and bioinformatics software!
MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.
Website
MS Ana is a scoring system to identify peptides in tandem mass spectrometry data using a library of previously identified spectra.
Website
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
Website
MSAndrea is an open modification search engine that is designed to directly identify peptide modifications on the PSM level.
GitHub
pyXLMS is a python package and web application with graphical user interface that aims to simplify and streamline the intermediate step of connecting crosslink search engine results with down-stream analysis tools.
Website
READ is a python-based tool to orchestrate mass spectrometry-based TMTpro-18plex protein quantification for single cell DIA and DDA searches.
Website