Citing

If you are using MS Annika please cite one of the following publications:

MS Annika 3.0

Proteome-wide non-cleavable crosslink identification with MS Annika 3.0 reveals the structure of the C. elegans Box C/D complex:

Proteome-wide non-cleavable crosslink identification with MS Annika 3.0 reveals the structure of the C. elegans Box C/D complex
Micha J. Birklbauer, Fränze Müller, Sowmya Sivakumar Geetha, Manuel Matzinger, Karl Mechtler, and Viktoria Dorfer
Communications Chemistry 2024 7 (300)
DOI: 10.1038/s42004-024-01386-x

MS Annika 2.0

or MS Annika 2.0 Identifies Cross-Linked Peptides in MS2–MS3-Based Workflows at High Sensitivity and Specificity:

MS Annika 2.0 Identifies Cross-Linked Peptides in MS2–MS3-Based Workflows at High Sensitivity and Specificity
Micha J. Birklbauer, Manuel Matzinger, Fränze Müller, Karl Mechtler, and Viktoria Dorfer
Journal of Proteome Research 2023 22 (9), 3009-3021
DOI: 10.1021/acs.jproteome.3c00325

MS Annika 1.0

or MS Annika: A New Cross-Linking Search Engine:

MS Annika: A New Cross-Linking Search Engine
Georg J. Pirklbauer, Christian E. Stieger, Manuel Matzinger, Stephan Winkler, Karl Mechtler, and Viktoria Dorfer
Journal of Proteome Research 2021 20 (5), 2560-2569
DOI: 10.1021/acs.jproteome.0c01000